ISTANBUL OKAN UNIVERSITY INFORMATION PACKAGE / COURSE CATALOGUE
| Genetics and Bioengineering (English) | |||||
| Bachelor | TR-NQF-HE: Level 6 | QF-EHEA: First Cycle | EQF-LLL: Level 6 | ||
General course introduction information
| Course Code: | GBE422 | ||||||||
| Course Name: | Industrial Genetics and Bioengineering II | ||||||||
| Course Semester: | Fall | ||||||||
| Course Credits: |
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| Language of instruction: | EN | ||||||||
| Course Requisites: | |||||||||
| Does the Course Require Work Experience?: | No | ||||||||
| Type of course: | Compulsory | ||||||||
| Course Level: |
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| Mode of Delivery: | Face to face | ||||||||
| Course Coordinator : | Dr.Öğr.Üyesi ELİF KUBAT ÖKTEM | ||||||||
| Course Lecturer(s): | |||||||||
| Course Assistants: |
Course Objective and Content
| Course Objectives: | At the end of this course the student will also be able to: • define the structure and function of plant cell and organelles, • develop fundamental knowledge in plant tissue culture and plant biotechnology, • explain the techniques used for plant transformation, • describe methodologies in transgenic plants and genetically modified organisms, • provide knowledge in intellectual property rights in plant biotechnology • familiar with basic bioinformatic tools used in plant science, |
| Course Content: | • History of biotechnological processes • Microbial Enzymes • Pre-fermentation processes • Post-fermentation processes • Industrial chemicals and fuels • Industrial microorganisms • Culture collection • Lecture and discussion • Lecture and discussion • catabolism • Glycolytic track paths • Glycolysis • Anaerobic respiration • Anabolizma • Kinetic velocity equations • Care energy and endogenesis respiration • Product formation kinetic modeling • Kinetic models of substrate use • Anaerobic reproduction without external electron donors • Reproduction stoichiometry • Semi-reaction concept • Dying coefficient • Maintenance coefficient • Specific breeding rate • Efficiency in aerobic reproduction • Anaerobic product formation • Discrete systems advantages and disadvantages • Advantages and disadvantages of semi-batch systems • Continuous systems advantages and disadvantages • Measurement of kinetic parameters in discrete system • Oxygen restriction in discrete system • Monod model and maintenance mechanism in continuous systems • Yoghurt and buttermilk production • Production of kefir and red • Cheese and butter technology • Sausage production • Pickle production • Vinegar production • Bread technology • Sourdough technology • Turnip production • Boza production • Tarhana production • Nutraceutical foods • pharmafoods • Fitösötik on • Probiotic, prebiotic and symbiotics • The benefits of probiotic bacteria • Single cell protein characterization • Industrial microbial enzymes • Deep culture technique • Alkaline method in cell disruption • Osmotic shock, ultra sound, lysozyme applications in cell disruption • Antibiotics • Organic acids • Vitamins • Amino acids • Organic acids • Diacetyl • Carbon dioxide •Hydrogen peroxide • bacteriocins |
Learning Outcomes
The students who have succeeded in this course;
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Lesson Plan
| Week | Subject | Related Preparation |
| 1) | • History of biotechnological processes • Microbial Enzymes • Pre-fermentation processes • Post-fermentation processes • Industrial chemicals and fuels • Plant Biotechnology History and Its Importance | - |
| 2) | • Industrial microorganisms • Culture collection • Mutagenesis-recombinant DNA • Improvement of fermentation microorganisms • Culture protection | - |
| 3) | • catabolism • Glycolytic track paths • Glycolysis • Anaerobic respiration • Anabolizma • Plant tissue culture techniques | - |
| 4) | • Kinetic velocity equations • Care energy and endogenesis respiration • Product formation kinetic modeling • Kinetic models of substrate use • Anaerobic reproduction without external electron donors • Techniques for Plant Transformation | - |
| 5) | • Reproduction stoichiometry • Semi-reaction concept • Dying coefficient • Maintenance coefficient • Specific breeding rate • Efficiency in aerobic reproduction • Anaerobic product formation • Transgenic plants for crop improvement • Genetically modified organisms | - |
| 6) | • Discrete systems advantages and disadvantages • Advantages and disadvantages of semi-batch systems • Continuous systems advantages and disadvantages • Measurement of kinetic parameters in discrete system • Oxygen restriction in discrete system • Monod model and maintenance mechanism in continuous systems • Field / Laboratory work | - |
| 7) | • MIDTERM | - |
| 8) | • Yoghurt and buttermilk production • Production of kefir and red • Cheese and butter technology • Sausage production • Intellectual property rights in plant biotechnology | - |
| 9) | • Turşu üretimi • Sirke üretimi • Ekmek teknolojisi • Ekşi hamur teknolojisi | - |
| 10) | • Turnip production • Boza production • Tarhana production | - |
| 11) | • Nutraceutical foods • pharmafoods • Fitösötik on • Probiotic, prebiotic and symbiotics • The benefits of probiotic bacteria | - |
| 12) | • Single cell protein characterization • Industrial microbial enzymes • Deep culture technique • Alkaline method in cell disruption • Osmotic shock, ultra sound, lysozyme applications in cell disruption | - |
| 13) | • Antibiotics • Organic acids • Vitamins • Amino acids | - |
| 14) | • Organic acids • Diacetyl • Carbon dioxide •Hydrogen peroxide • bacteriocins | - |
| 15) | final exam | - |
Sources
| Course Notes / Textbooks: | • Biyoreaksiyon Mühendisliği, Biyolojik Proseslerin Kinetiği ve Modellenmesi, Su Vakfı Yayınları, Kocaeli, 2005 • Plant Biotechnology: The Genetic Manipulation of Plants (2nd ed.) by Adrian Slater, Nigel W. Scott, and Mark R. Fowler, 2012. • Introduction to Biotechnology (2nd ed.) by Thieman, W. J. and Palladino M. A., 2009. • Plants from Test Tubes by L. Kyte and J. Kleyn, 1996. • Micropropagation by P. Debergh and R. H. Zimmerman, 1994 |
| References: | • Biyoreaksiyon Mühendisliği, Biyolojik Proseslerin Kinetiği ve Modellenmesi, Su Vakfı Yayınları, Kocaeli, 2005 • Plant Biotechnology: The Genetic Manipulation of Plants (2nd ed.) by Adrian Slater, Nigel W. Scott, and Mark R. Fowler, 2012. • Introduction to Biotechnology (2nd ed.) by Thieman, W. J. and Palladino M. A., 2009. • Plants from Test Tubes by L. Kyte and J. Kleyn, 1996. • Micropropagation by P. Debergh and R. H. Zimmerman, 1994 |
Course-Program Learning Outcome Relationship
| Learning Outcomes | 1 |
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| Program Outcomes | ||||||||||
| 1) Sufficient knowledge in mathematics, science and engineering related to their branches; and the ability to apply theoretical and practical knowledge in these areas to model and solve engineering problems. | ||||||||||
| 2) The ability to identify, formulate, and solve complex engineering problems; selecting and applying appropriate analysis and modeling methods for this purpose. | ||||||||||
| 3) The ability to design a complex system, process, device or product under realistic constraints and conditions to meet specific requirements; the ability to apply modern design methods for this purpose. (Realistic constraints and conditions include such issues as economy, environmental issues, sustainability, manufacturability, ethics, health, safety, social and political issues, according to the nature of design.) | ||||||||||
| 4) Ability to develop, select and use modern techniques and tools necessary for engineering applications; ability to use information technologies effectively. | ||||||||||
| 5) Ability to design experiments, conduct experiments, collect data, analyze and interpret results to examine engineering problems or discipline-specific research topics. | ||||||||||
| 6) The ability to work effectively in disciplinary and multidisciplinary teams; individual work skill. | ||||||||||
| 7) Effective communication skills in Turkish oral and written communication; at least one foreign language knowledge; ability to write effective reports and understand written reports, to prepare design and production reports, to make effective presentations, to give and receive clear and understandable instructions. | ||||||||||
| 8) Awareness of the need for lifelong learning; access to knowledge, ability to follow developments in science and technology, and constant self-renewal. | ||||||||||
| 9) Conform to ethical principles, and standards of professional and ethical responsibility; be informed about the standards used in engineering applications. | ||||||||||
| 10) Awareness of applications in business, such as project management, risk management and change management; awareness of entrepreneurship, and innovation; information about sustainable development. | ||||||||||
| 11) Information about the universal and social health, environmental and safety effects of engineering applications and the ways in which contemporary problems are reflected in the engineering field; awareness of the legal consequences of engineering solutions. | ||||||||||
Course - Learning Outcome Relationship
| No Effect | 1 Lowest | 2 Low | 3 Average | 4 High | 5 Highest |
| Program Outcomes | Level of Contribution | |
| 1) | Sufficient knowledge in mathematics, science and engineering related to their branches; and the ability to apply theoretical and practical knowledge in these areas to model and solve engineering problems. | |
| 2) | The ability to identify, formulate, and solve complex engineering problems; selecting and applying appropriate analysis and modeling methods for this purpose. | 1 |
| 3) | The ability to design a complex system, process, device or product under realistic constraints and conditions to meet specific requirements; the ability to apply modern design methods for this purpose. (Realistic constraints and conditions include such issues as economy, environmental issues, sustainability, manufacturability, ethics, health, safety, social and political issues, according to the nature of design.) | 1 |
| 4) | Ability to develop, select and use modern techniques and tools necessary for engineering applications; ability to use information technologies effectively. | 1 |
| 5) | Ability to design experiments, conduct experiments, collect data, analyze and interpret results to examine engineering problems or discipline-specific research topics. | |
| 6) | The ability to work effectively in disciplinary and multidisciplinary teams; individual work skill. | 1 |
| 7) | Effective communication skills in Turkish oral and written communication; at least one foreign language knowledge; ability to write effective reports and understand written reports, to prepare design and production reports, to make effective presentations, to give and receive clear and understandable instructions. | 1 |
| 8) | Awareness of the need for lifelong learning; access to knowledge, ability to follow developments in science and technology, and constant self-renewal. | 1 |
| 9) | Conform to ethical principles, and standards of professional and ethical responsibility; be informed about the standards used in engineering applications. | |
| 10) | Awareness of applications in business, such as project management, risk management and change management; awareness of entrepreneurship, and innovation; information about sustainable development. | 1 |
| 11) | Information about the universal and social health, environmental and safety effects of engineering applications and the ways in which contemporary problems are reflected in the engineering field; awareness of the legal consequences of engineering solutions. | 1 |
Learning Activity and Teaching Methods
| Expression | |
| Brainstorming/ Six tihnking hats | |
| Lesson | |
| Project preparation |
Assessment & Grading Methods and Criteria
| Written Exam (Open-ended questions, multiple choice, true-false, matching, fill in the blanks, sequencing) | |
| Application | |
| Group project | |
| Presentation | |
| Reporting |
Assessment & Grading
| Semester Requirements | Number of Activities | Level of Contribution |
| Attendance | 15 | % 10 |
| Presentation | 1 | % 15 |
| Project | 1 | % 20 |
| Midterms | 1 | % 25 |
| Final | 1 | % 30 |
| total | % 100 | |
| PERCENTAGE OF SEMESTER WORK | % 70 | |
| PERCENTAGE OF FINAL WORK | % 30 | |
| total | % 100 | |
Workload and ECTS Credit Grading
| Activities | Number of Activities | Duration (Hours) | Workload |
| Course Hours | 15 | 4 | 60 |
| Laboratory | 15 | 4 | 60 |
| Presentations / Seminar | 1 | 2 | 2 |
| Midterms | 1 | 2 | 2 |
| Final | 1 | 2 | 2 |
| Total Workload | 126 | ||